Index

Symbols

--animal sl-check-window command line option sl-experiment command line option sl-lick-train command line option sl-run-train command line option --animal_weight sl-experiment command line option sl-lick-train command line option sl-run-train command line option --duration_step sl-run-train command line option --errors sl-devices command line option --experiment sl-experiment command line option --increase_threshold sl-run-train command line option --initial_duration sl-run-train command line option --initial_speed sl-run-train command line option --input_string sl-crc command line option --maximum_delay sl-lick-train command line option --maximum_idle_time sl-run-train command line option --maximum_time sl-lick-train command line option sl-run-train command line option --maximum_volume sl-lick-train command line option sl-run-train command line option --minimum_delay sl-lick-train command line option --project sl-check-window command line option sl-experiment command line option sl-lick-train command line option sl-run-train command line option --restore_parameters sl-lick-train command line option sl-run-train command line option --session-path sl-preprocess command line option --speed_step sl-run-train command line option --unconsumed_rewards sl-lick-train command line option sl-run-train command line option --user sl-experiment command line option sl-lick-train command line option sl-run-train command line option

-a sl-check-window command line option sl-experiment command line option sl-lick-train command line option sl-run-train command line option -ds sl-run-train command line option -e sl-devices command line option sl-experiment command line option -i sl-crc command line option -id sl-run-train command line option -is sl-run-train command line option -it sl-run-train command line option -max sl-lick-train command line option -min sl-lick-train command line option -mit sl-run-train command line option -p sl-check-window command line option sl-experiment command line option sl-lick-train command line option sl-run-train command line option -r sl-lick-train command line option sl-run-train command line option -sp sl-preprocess command line option -ss sl-run-train command line option -t sl-lick-train command line option sl-run-train command line option -u sl-experiment command line option sl-lick-train command line option sl-run-train command line option -ur sl-lick-train command line option sl-run-train command line option -v sl-lick-train command line option sl-run-train command line option -w sl-experiment command line option sl-lick-train command line option sl-run-train command line option

_

_animal_id (sl_experiment.shared_components.SurgerySheet attribute) _animals (sl_experiment.shared_components.SurgerySheet attribute) (sl_experiment.shared_components.WaterSheet attribute) _calculator (sl_experiment.mesoscope_vr.CRCCalculator attribute) _calibration_cov (sl_experiment.shared_components.ValveInterface attribute) _capacity_in_newtons_cm (sl_experiment.shared_components.TorqueInterface attribute) _cm_per_pulse (sl_experiment.shared_components.EncoderInterface attribute) _communication (sl_experiment.shared_components.EncoderInterface attribute) (sl_experiment.shared_components.LickInterface attribute) _cycle_timer (sl_experiment.shared_components.ValveInterface attribute) _debug (sl_experiment.shared_components.BreakInterface attribute) (sl_experiment.shared_components.EncoderInterface attribute) (sl_experiment.shared_components.LickInterface attribute) (sl_experiment.shared_components.ScreenInterface attribute) (sl_experiment.shared_components.TorqueInterface attribute) (sl_experiment.shared_components.TTLInterface attribute) (sl_experiment.shared_components.ValveInterface attribute) _distance_tracker (sl_experiment.shared_components.EncoderInterface attribute) _force_per_adc_unit (sl_experiment.shared_components.TorqueInterface attribute) _force_per_pwm (sl_experiment.shared_components.BreakInterface attribute) _headers (sl_experiment.shared_components.SurgerySheet attribute) (sl_experiment.shared_components.WaterSheet attribute) _initially_on (sl_experiment.shared_components.ScreenInterface attribute) _lick_threshold (sl_experiment.shared_components.LickInterface attribute) _lick_tracker (sl_experiment.shared_components.LickInterface attribute)

_maximum_break_strength (sl_experiment.shared_components.BreakInterface attribute) _minimum_break_strength (sl_experiment.shared_components.BreakInterface attribute) _motion_topic (sl_experiment.shared_components.EncoderInterface attribute) _newton_per_gram_centimeter (sl_experiment.shared_components.BreakInterface attribute) (sl_experiment.shared_components.TorqueInterface attribute) _nonlinearity_exponent (sl_experiment.shared_components.ValveInterface attribute) _object_diameter (sl_experiment.shared_components.EncoderInterface attribute) _ppr (sl_experiment.shared_components.EncoderInterface attribute) _previous_readout_zero (sl_experiment.shared_components.LickInterface attribute) _previous_state (sl_experiment.shared_components.ValveInterface attribute) _project_name (sl_experiment.shared_components.SurgerySheet attribute) _pulse_tracker (sl_experiment.shared_components.TTLInterface attribute) _report_pulses (sl_experiment.shared_components.TTLInterface attribute) _reward_topic (sl_experiment.shared_components.ValveInterface attribute) _scale_coefficient (sl_experiment.shared_components.ValveInterface attribute) _sensor_topic (sl_experiment.shared_components.LickInterface attribute) _service (sl_experiment.shared_components.SurgerySheet attribute) (sl_experiment.shared_components.WaterSheet attribute) _sheet_id (sl_experiment.shared_components.SurgerySheet attribute) (sl_experiment.shared_components.WaterSheet attribute) _sheet_id_numeric (sl_experiment.shared_components.WaterSheet attribute) _torque_per_adc_unit (sl_experiment.shared_components.TorqueInterface attribute) _torque_per_pwm (sl_experiment.shared_components.BreakInterface attribute) _unity_unit_per_pulse (sl_experiment.shared_components.EncoderInterface attribute) _valve_tracker (sl_experiment.shared_components.ValveInterface attribute) _volt_per_adc_unit (sl_experiment.shared_components.LickInterface attribute)

B

BreakInterface (class in sl_experiment.shared_components)

bytes_checksum() (sl_experiment.mesoscope_vr.CRCCalculator method)

C

calibrate() (sl_experiment.shared_components.ValveInterface method) calibration_covariance (sl_experiment.shared_components.ValveInterface property) check_state() (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method)

cm_per_pulse (sl_experiment.shared_components.EncoderInterface property) CRCCalculator (class in sl_experiment.mesoscope_vr)

D

delivered_volume (sl_experiment.shared_components.ValveInterface property)

discover_zaber_devices() (in module sl_experiment.mesoscope_vr) distance_tracker (sl_experiment.shared_components.EncoderInterface property)

E

EncoderInterface (class in sl_experiment.shared_components)

experiment_logic() (in module sl_experiment.mesoscope_vr) extract_animal_data() (sl_experiment.shared_components.SurgerySheet method)

F

force_per_adc_unit (sl_experiment.shared_components.TorqueInterface property)

force_per_pwm (sl_experiment.shared_components.BreakInterface property)

G

get_adc_units_from_torque() (sl_experiment.shared_components.TorqueInterface method) get_adc_units_from_volts() (sl_experiment.shared_components.LickInterface method)

get_duration_from_volume() (sl_experiment.shared_components.ValveInterface method) get_ppr() (sl_experiment.shared_components.EncoderInterface method) get_pwm_from_torque() (sl_experiment.shared_components.BreakInterface method)

I

initialize_remote_assets() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method)

initially_on (sl_experiment.shared_components.ScreenInterface property)

L

lick_threshold (sl_experiment.shared_components.LickInterface property) lick_tracker (sl_experiment.shared_components.LickInterface property)

lick_training_logic() (in module sl_experiment.mesoscope_vr) LickInterface (class in sl_experiment.shared_components)

M

maintenance_logic() (in module sl_experiment.mesoscope_vr) maximum_break_strength (sl_experiment.shared_components.BreakInterface property) minimum_break_strength (sl_experiment.shared_components.BreakInterface property) module sl_experiment.cli sl_experiment.mesoscope_vr sl_experiment.shared_components

mqtt_topic (sl_experiment.shared_components.EncoderInterface property) (sl_experiment.shared_components.LickInterface property) (sl_experiment.shared_components.ValveInterface property)

N

nonlinearity_exponent (sl_experiment.shared_components.ValveInterface property)

P

parse_mqtt_command() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method) preprocess_session_data() (in module sl_experiment.mesoscope_vr)

process_received_data() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method) pulse_count (sl_experiment.shared_components.TTLInterface property) purge_redundant_data() (in module sl_experiment.mesoscope_vr)

R

reset_pulse_count() (sl_experiment.shared_components.EncoderInterface method)

run_training_logic() (in module sl_experiment.mesoscope_vr)

S

scale_coefficient (sl_experiment.shared_components.ValveInterface property) ScreenInterface (class in sl_experiment.shared_components) send_pulse() (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method) set_breaking_power() (sl_experiment.shared_components.BreakInterface method) set_parameters() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method) sl-check-window command line option --animal --project -a -p sl-crc command line option --input_string -i sl-devices command line option --errors -e sl-experiment command line option --animal --animal_weight --experiment --project --user -a -e -p -u -w sl-lick-train command line option --animal --animal_weight --maximum_delay --maximum_time --maximum_volume --minimum_delay --project --restore_parameters --unconsumed_rewards --user -a -max -min -p -r -t -u -ur -v -w

sl-preprocess command line option --session-path -sp sl-run-train command line option --animal --animal_weight --duration_step --increase_threshold --initial_duration --initial_speed --maximum_idle_time --maximum_time --maximum_volume --project --restore_parameters --speed_step --unconsumed_rewards --user -a -ds -id -is -it -mit -p -r -ss -t -u -ur -v -w sl_experiment.cli module sl_experiment.mesoscope_vr module sl_experiment.shared_components module string_checksum() (sl_experiment.mesoscope_vr.CRCCalculator method) SurgerySheet (class in sl_experiment.shared_components)

T

terminate_remote_assets() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.EncoderInterface method) (sl_experiment.shared_components.LickInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TorqueInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method) toggle() (sl_experiment.shared_components.BreakInterface method) (sl_experiment.shared_components.ScreenInterface method) (sl_experiment.shared_components.TTLInterface method) (sl_experiment.shared_components.ValveInterface method)

tone() (sl_experiment.shared_components.ValveInterface method) torque_per_adc_unit (sl_experiment.shared_components.TorqueInterface property) torque_per_pwm (sl_experiment.shared_components.BreakInterface property) TorqueInterface (class in sl_experiment.shared_components) TTLInterface (class in sl_experiment.shared_components)

U

update_surgery_quality() (sl_experiment.shared_components.SurgerySheet method)

update_water_log() (sl_experiment.shared_components.WaterSheet method)

V

valve_tracker (sl_experiment.shared_components.ValveInterface property)

ValveInterface (class in sl_experiment.shared_components) volts_per_adc_unit (sl_experiment.shared_components.LickInterface property)

W

WaterSheet (class in sl_experiment.shared_components)

window_checking_logic() (in module sl_experiment.mesoscope_vr)